Joudi, W, Ghaderzadeh, S, Trentino, A, Mizohata, K, Mustonen, K, Besley, E, Kotakoski, J & Åhlgren, EH 2025, 'Two-Dimensional One-Atom-Thick Gold Grown on Defect-Engineered Graphene', ACS Nano, vol. 19, no. 24, pp. 22032–22043. https://doi.org/10.1021/acsnano.5c01538

Lamprecht, D, Benzer, A, Längle, M, Capin, M, Mangler, C, Susi, T, Filipovic, L & Kotakoski, J 2025, 'Uncovering the Atomic Structure of Substitutional Platinum Dopants in MoS₂ with Single-Sideband Ptychography', Nano Letters, vol. 25, no. 22, pp. 8931-8938. https://doi.org/10.1021/acs.nanolett.5c00919

Speckmann, C, Angeletti, A, Kývala, L, Lamprecht, D, Herterich, F, Mangler, C, Filipovic, L, Dellago, C, Franchini, C & Kotakoski, J 2025, 'Electron-Beam-Induced Adatom-Vacancy-Complexes in Mono- and Bilayer Phosphorene', Advanced Materials Interfaces, vol. 12, no. 9, 2400784. https://doi.org/10.48550/arXiv.2409.11102, https://doi.org/10.1002/admi.202400784

Joudi, W, Windisch, RS, Trentino, A, Propst, D, Madsen, J, Susi, T, Mangler, C, Mustonen, K, Libisch, F & Kotakoski, J 2025, 'Corrugation-Dominated Mechanical Softening of Defect-Engineered Graphene', Physical Review Letters, vol. 134, no. 16, 166102. https://doi.org/10.1103/PhysRevLett.134.166102

Fruehwald, HM, Liebsch, Y, Javed, U, Lebius, H, Grygiel, C, Rahali, R, Kotakoski, J, Schleberger, M & Smith, RDL 2025, 'Basal-Plane Pores Activate Monolayer MoS₂ for the Hydrogen Evolution Reaction', ACS Catalysis, vol. 15, no. 5, pp. 3768-3776. https://doi.org/10.1021/acscatal.4c07970

Kröckel, C, Ludacka, U, Singh, R, Kotakoski, J, Hauke, F, Hirsch, A, Reich, S & Chacón-Torres, JC 2025, 'Structural stability in potassium doped single-walled carbon nanotubes, and surface functionalization', Carbon, vol. 234, 119992. https://doi.org/10.1016/j.carbon.2025.119992

Speckmann, C, Mustonen, K, Propst, D, Mangler, C & Kotakoski, J 2025, 'Electron irradiation effects on monolayer MoS₂ at elevated temperatures', Physical Review B, vol. 111, no. 5, 054107. https://doi.org/10.48550/arXiv.2411.03200, https://doi.org/10.1103/PhysRevB.111.054107

Chesnyak, V, Perilli, D, Panighel, M, Namar, A, Markevich, A, Bui, TTA, Ugolotti, A, Farooq, A, Stredansky, M, Kofler, C, Cepek, C, Comelli, G, Kotakoski, J, Di Valentin, C & Africh, C 2024, 'Scalable bottom-up synthesis of Co-Ni–doped graphene', Science Advances, vol. 10, no. 45, eado8956. https://doi.org/10.1126/sciadv.ado8956

Propst, D, Joudi, W, Längle, M, Madsen, J, Kofler, C, Mayer, BM, Lamprecht, D, Mangler, C, Filipovic, L, Susi, T & Kotakoski, J 2024, 'Automated image acquisition and analysis of graphene and hexagonal boron nitride from pristine to highly defective and amorphous structures', Scientific Reports, vol. 14, no. 1, 26939. https://doi.org/10.1038/s41598-024-77740-9

Noisternig, SM, Rentenberger, C, Gammer, C, Karnthaler, HP & Kotakoski, J 2024, 'Probing the interaction range of electron beam-induced etching in STEM by a non-contact electron beam', Ultramicroscopy, vol. 265, 114019. https://doi.org/10.1016/j.ultramic.2024.114019

Trentino, A, Zagler, G, Längle, M, Madsen, J, Susi, T, Mangler, C, Åhlgren, EH, Mustonen, K & Kotakoski, J 2024, 'Single atoms and metal nanoclusters anchored to graphene vacancies', Micron, vol. 184, 103667. https://doi.org/10.1016/j.micron.2024.103667

Elibol, K, Susi, T, Mangler, C, Eder, D, Meyer, JC, Kotakoski, J, Hobbs, RG, van Aken, PA & Bayer, BC 2024, 'Formation of Metal Atom Chains at the Edges of Graphene Nanoribbons Supported by Graphene', Microscopy and Microanalysis, vol. 30, no. Suppl. 1, pp. 1576-1577. https://doi.org/10.1093/mam/ozae044.778

Susi, T, Dellby, N, Hayner, R, Hofer, C, Kotakoski, J, Lovejoy, TC, Mangler, C, Mittelberger, A, Pennycook, TJ & Plotkin-Swing, B 2024, 'Open-Source Phase Reconstructions of Focused-Probe 4D-STEM Data with Near-Ideal Direct-Electron Detection', Microscopy and Microanalysis, vol. 30, no. Suppl. 1, pp. 1863-1864. https://doi.org/10.1093/mam/ozae044.920

Javed, U, Speckmann, C, Joudi, W, Längle, M, Trentino, A, Ahlgren, EH, Lamprecht, D, Mangler, C, Mustonen, K, Susi, T & Kotakoski, J 2024, 'Scanning Transmission Electron Microscopy as a Part of an Integrated Vacuum Setup for Growth and Manipulation of 2D Materials', Microscopy and Microanalysis, vol. 30, no. Supplement_1, ozae044.547. https://doi.org/10.1093/mam/ozae044.547

Längle, M, Mizohata, K, Mangler, C, Trentino, A, Mustonen, K, Åhlgren, EH & Kotakoski, J 2024, 'Two-dimensional few-atom noble gas clusters in a graphene sandwich', Nature Materials, vol. 23, no. 6, pp. 762–767. https://doi.org/10.48550/arXiv.2306.15436, https://doi.org/10.1038/s41563-023-01780-1

Lucherelli, MA, Stiegler, LMS, Steiger, F, Åhlgren, EH, Requena-Ramírez, J, Castro, E, Echegoyen, L, Hirsch, A, Peukert, W, Kotakoski, J, Walter, J, Pérez-Ojeda, ME & Abellán, G 2024, 'Carbon nano-onions: Individualization and enhanced water dispersibility', Carbon, vol. 218, 118760. https://doi.org/10.1016/j.carbon.2023.118760

Javed, U, Kofler, C, Mangler, C & Kotakoski, J 2024, 'Influence of low-pressure atmosphere in the pores formed in hexagonal boron nitride under electron irradiation', BIO Web of Conferences, vol. 129, 22030. https://doi.org/10.1051/bioconf/202412922030

Niggas, A, Fischer, L, Kretschmer, S, Werl, M, Biber, H, Speckmann, C, McEvoy, N, Kotakoski, J, Aumayr, F, Krasheninnikov, AV & Wilhelm, RA 2023, 'Charge-exchange-dependent energy loss of H and He in freestanding monolayers of graphene and MoS₂', Physical Review A, vol. 108, no. 6, 062823. https://doi.org/10.1103/PhysRevA.108.062823

Zhussupbekov, K, Ansari, L, Elibol, K, Zhussupbekova, A, Kotakoski, J, Shvets, IV, Duesberg, GS, Hurley, PK, McEvoy, N, Ó Coileáin, C & Gity, F 2023, 'Revealing the influence of edge states on the electronic properties of PtSe₂', Applied Materials Today, vol. 35, 101926. https://doi.org/10.1016/j.apmt.2023.101926

Zagler, G, Trentino, A, Mustonen, K, Mangler, C & Kotakoski, J 2023, 'Interface effects on titanium growth on graphene', 2D Materials, vol. 10, no. 4, 045025. https://doi.org/10.1088/2053-1583/acf22e